pooled_s2189.ctg002983c_hifiasm_circ MAG

Organism: Ligilactobacillus aviarius
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Ligilactobacillus

Attributes

broad-scale environmental context	Gallus gallus
collection date	2021-09-15
environmental medium	Caecal contents
geographic location	United Kingdom
isolation source	Caecal contents from a chicken (Gallus gallus)
project name	Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample name	pooled_s2189.ctg002983c_hifiasm_circ MAG
ENA first public	2024-05-09
ENA-CHECKLIST	ERC000011
External Id	SAMEA115146568
INSDC center name	The Roslin Institute (University of Edinburgh)
INSDC last update	2024-01-26T11:57:51Z
INSDC status	public
Submitter Id	pooled_s2189.ctg002983c_hifiasm_circ MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Hifiasm-meta
binning parameters	Not applicable
binning software	Not applicable
completeness score	99.48
completeness software	CheckM2
contamination score	0.25
geographic location (latitude)	55.86
geographic location (longitude)	-3.2
local environmental context	Gastrointestinal tract microbiota
metagenomic source	chicken gut metagenome
sample derived from	ERS16138921, ERS16138922, ERS16138923, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138931, ERS16138932, ERS16138933, ERS16138934, ERS16138935, ERS16138936, ERS16138937, ERS16138938, ERS16138939, ERS16138940, ERS16138941, ERS16138942, ERS16138943, ERS16138944
scientific_name	Ligilactobacillus aviarius
taxonomic identity marker	GTDB-Tk

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138921, ERS16138922, ERS16138923, ERS16138924, ERS16138925, ERS16138926, ERS16138927, ERS16138928, ERS16138929, ERS16138930, ERS16138931, ERS16138932, ERS16138933, ERS16138934, ERS16138935, ERS16138936, ERS16138937, ERS16138938, ERS16138939, ERS16138940, ERS16138941, ERS16138942, ERS16138943, ERS16138944

BioProject: PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
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