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ERS11712897

Identifiers
BioSample: SAMEA110052719; SRA: ERS12044483
Organism
Candidatus Sulfopaludibacter sp. SbA3
cellular organisms; Bacteria; Pseudomonadati; Acidobacteriota; Terriglobia; Bryobacterales; Solibacteraceae; Candidatus Sulfopaludibacter; unclassified Candidatus Sulfopaludibacter
Attributes
collection date2018-05-09
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB52406
sample nameHRS-HS13-bin-82
ENA first public2024-05-23
ENA-CHECKLISTERC000047
External IdSAMEA110052719
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC last update2022-08-23T18:21:01Z
INSDC statuspublic
Submitter IdHRS-HS13-bin-82
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT; kmer set 49,69,89,109,129,149
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score62.92
completeness softwarecheckm
contamination score0
geographic location (latitude)48.846361
geographic location (longitude)14.487639
metagenomic sourcefreshwater metagenome
sample derived fromERS11712897
scientific_nameCandidatus Sulfopaludibacter sp. SbA3
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

Bacteria; Acidobacteria

Submission
EBI; 2024-05-24
Accession:
SAMEA110052719
ID:
41520126

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