ERS11624248

Organism: Sphingorhabdus sp. EL138
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingorhabdus; unclassified Sphingorhabdus

Attributes

collection date	2018-06-06
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB49198
sample name	VK-K52-KG-4-mx-bin867
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2024-05-24T00:31:10Z
ENA-LAST-UPDATE	2024-05-24T00:31:10Z
External Id	SAMEA110021487
INSDC center name	Biology Centre CAS
INSDC first public	2024-05-24T00:31:10Z
INSDC last update	2024-05-24T00:31:10Z
INSDC status	public
Submitter Id	VK-K52-KG-4-mx-bin867
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	98.91
completeness software	checkm
contamination score	0.94
geographic location (latitude)	50.06523942
geographic location (longitude)	13.93270926
metagenomic source	freshwater metagenome
sample derived from	ERS11624248
scientific_name	Sphingorhabdus sp. EL138
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: VK-K52-KG-4-mx-bin867 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingorhabdus

BioSample