| broad-scale environmental context | aquatic biome |
|---|
| collected by | JOAQUIM GOES |
|---|
| collection date | 2015-01-13 |
|---|
| depth | 0.0 |
|---|
| environmental medium | dinoflagellate culture |
|---|
| geographic location | Oman |
|---|
| host life stage | not provided |
|---|
| host | Noctiluca scintillans |
|---|
| host sex | not applicable |
|---|
| host taxonomy ID | 2966 (2966) |
|---|
| identified by | JOAQUIM GOES | SENJIE LIN |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | Dinoflagellate: Noctiluca scintillans |
|---|
| tissue | WHOLE ORGANISM |
|---|
| project name | ASG |
|---|
| family role | Endosymbiont |
|---|
| sample name | 36db4ad0-72cc-40d5-96ed-257b2e149219 |
|---|
| specimen voucher | NOT APPLICABLE |
|---|
| 16S recovery software | PROKKA (version 1.14.6) |
|---|
| 16s recovered | Yes |
|---|
| ENA first public | 2024-07-31 |
|---|
| ENA-CHECKLIST | ERC000050 |
|---|
| GAL | Nova Southeastern University |
|---|
| GAL_sample_id | NOT PROVIDED |
|---|
| INSDC center name | Tree of Life Programme |
|---|
| INSDC status | public |
|---|
| MAG coverage software | Minimap2 (version 2.24-r1122) |
|---|
| Submitter Id | 36db4ad0-72cc-40d5-96ed-257b2e149219 |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | metaMDBG (version 0.3) |
|---|
| barcoding center | NOVA SOUTHEASTERN UNIVERSITY |
|---|
| binning parameters | coverage; graph; hic-mapping |
|---|
| binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15); bin3C (version 0.3.3); MaxBin (version 2.2.7); MetaTOR |
|---|
| collecting institution | COLUMBIA UNIVERSITY |
|---|
| completeness score | 98.8 |
|---|
| completeness software | checkM (version 1.2.2); checkM_DB (release 2015-01-16) |
|---|
| contamination score | 2.22 |
|---|
| geographic location (latitude) | 23.53 |
|---|
| geographic location (longitude) | 58.75 |
|---|
| geographic location (region and locality) | Bandar Al Khairan |
|---|
| habitat | Coastal ocean |
|---|
| identifier_affiliation | COLUMBIA UNIVERSITY | UNIVERSITY OF CONNECTICUT |
|---|
| local environmental context | marine biome |
|---|
| metagenomic source | dinoflagellate metagenome |
|---|
| number of standard tRNAs extracted | 52 |
|---|
| sample derived from | SAMEA115885753 |
|---|
| scientific_name | Roseovarius indicus |
|---|
| sequencing method | Pacbio Sequel II |
|---|
| specimen_id | NSU0024101 |
|---|
| tRNA extraction software | PROKKA (version 1.14.6) |
|---|
| taxonomic classification | GTDB-TK (version 2.4.0); GTDB (release 214) |
|---|
| taxonomic identity marker | ani_screen |
|---|
| tolid | pyNocScin1.Roseovarius_indicus_1 |
|---|