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Metagenome-assembled genome: public_ERR4179389_metawrap_bin.8

Identifiers
BioSample: SAMEA115955384; SRA: ERS20915173
Organism
uncultured Caballeronia sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia; environmental samples
Attributes
broad-scale environmental contextThallus of Cladonia furcata lichen
collection datenot provided
environmental mediumlichen thallus
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcelichen metagenome
project nameBacteria have recently emerged as important constituents of the lichen holobiont, which is defined as a symbiotic association of a mycobiont (fungus) and a photobiont (green alga and/or cyanobacterium). Lichens are classical models for symbiosis, now they are used to get mechanistic insights into native microbiome functioning. A high proportion of the present bacteria remains uncultivable with current approaches, thus their ecological function in globally widespread lichenized fungi is still mostly unknown. In the present study, 29 bacterial metagenome-assembled genome (MAG) sequences were constructed from three different lichenized fungi metagenomes and taxonomically classified to three phyla. This resource provides a new basis to further shed light on the ecological functions of bacterial symbionts in lichenized fungi.
sample namepublic_ERR4179389_metawrap_bin.8
ENA first public2024-09-19
ENA-CHECKLISTERC000047
INSDC center nameSpribille Lab
INSDC statuspublic
Submitter Idpublic_ERR4179389_metawrap_bin.8
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes_v3.13
binning parametersdefault
binning softwaremetaWRAP_v.1.2
completeness score92.97
completeness softwareCheckM_v1.1.3
contamination score2.62
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextlichen thallus
metagenomic sourcelichen metagenome
sample derived fromSAMEA6862453
scientific_nameuncultured Caballeronia sp.
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR4179389 of study ERP121945.

BioProject
PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
Retrieve all samples from this project

Submission
EBI; 2024-09-20
Accession:
SAMEA115955384
ID:
43837250

BioProject Nucleotide

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