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Fram Strait/WSC water column MAG – FRAM_RAS_F4_12_1920_1-MAG_44

Identifiers
BioSample: SAMEA116133603; SRA: ERS21137442
Organism
Pseudoalteromonas prydzensis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas
Attributes
broad-scale environmental contextmarine pelagic biome [ENVO:01000023]
collection date2019-12-04
depth22.65
environmental mediumsea water [ENVO:00002149]
geographic locationSvalbard
isolation sourceseawater
project nameFRAM_RAS_WSC_F4_metagenomes
sample nameFRAM_RAS_F4_12_1920_1-MAG_44
ENA first public2024-10-09
ENA-CHECKLISTERC000047
INSDC center nameMAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC statuspublic
Submitter IdFRAM_RAS_F4_12_1920_1-MAG_44
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareFlye v2.9.1
binning parametersDefault settings
binning softwareMetabat2 v2.15
completeness score100
completeness softwareCheckM v1.2.0
contamination score0
geographic location (latitude)79.02
geographic location (longitude)6.97
local environmental contextmarine photic zone [ENVO:00000209]
metagenomic sourcemarine metagenome
sample derived fromERR12117716,ERS16474250
scientific_namePseudoalteromonas prydzensis
taxonomic identity marker16S rRNA gene and multi-gene marker approach
Description

Metagenome-assembled genome generated from a water column sample collected in West Spitsbergen Current, Fram Strait - specifically derived from ERR12117716,ERS16474250

BioProject
PRJEB67368 FRAM_RAS_WSC_F4_metagenomes
Retrieve all samples from this project

Submission
EBI; 2024-10-10
Accession:
SAMEA116133603
ID:
44239247

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