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ST8

Identifiers
BioSample: SAMEA115999775; SRA: ERS20963374
Organism
Helicobacter pylori
cellular organisms; Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter
Attributes
collection datenot collected
geographic locationnot collected
isolatenot applicable
tissuewhole organism
sample nameE-MTAB-14439:ST8
ENA first public2024-11-07
ENA-CHECKLISTERC000011
INSDC center nameNTU
INSDC statuspublic
Submitter IdE-MTAB-14439:ST8
broker nameArrayExpress
scientific_nameHelicobacter pylori
Description

Protocols: Bacteria were harvested by centrifugation and the cell pellets were submerged in Trizol and shipped on dry ice to Macrogen Inc. (South Korea) for RNA extraction and sequencing. Samples were relabelled in a randomised order before sending to the sequencing provider, to avoid any potential for introduction of a technical batch effect based on which group (treated or untreated) the samples belonged to. Total RNA extraction was conducted by Macrogen Inc. (South Korea). Total RNA was quality checked to confirm that all were of acceptable RNA Integrity Number (RIN >7). Libraries were constructed using the Illumina TruSeq Stranded Total RNA (Illumina Inc, San Diego) protocol with ribosomal RNA depletion (Ribo-Zero).

BioProject
PRJEB79912 Menadione reduces the expression of virulence- and colonisation-associated genes in Helicobacter pylori
Retrieve all samples from this project

Submission
EBI; 2024-11-08
Accession:
SAMEA115999775
ID:
44633308

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