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Metagenome-assembled genome: binchicken_co172_26

Identifiers
BioSample: SAMEA117363826; SRA: ERS22431361
Organism
uncultured Methylococcaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; environmental samples
Attributes
broad-scale environmental contextaquatic
collection datenot provided
environmental mediumaquatic
geographic locationPacific Ocean
investigation typemetagenome-assembled genome
isolation sourcehydrothermal vent metagenome
project nameThe Zetaproteobacteria are ubiquitous in marine environments, yet this class of Proteobacteria is only represented by a few closely related cultured isolates. In high-iron environments, such as diffuse hydrothermal vents, the Zetaproteobacteria are important members of the community driving its structure. Biogeography of Zetaproteobacteria has shown two ubiquitous operational taxonomic units (OTUs) yet much is unknown about their genomic diversity. This project focused on metagenomic sequencing of Zetaproteobacterial rich microbial communities.
sample namebinchicken_co172_26
ENA first public2024-12-11
ENA-CHECKLISTERC000047
INSDC center nameCMR
INSDC statuspublic
Submitter Idbinchicken_co172_26
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes;3.15.4;default
binning parameterscoverage and kmer
binning softwareMetaBAT2;2.15;default
completeness score91.82
completeness softwareCheckM2;1.0.2;default
contamination score3.76
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contexthydrothermal vent biome
metagenomic sourcehydrothermal vent metagenome
sample derived fromSAMN06226864,SAMN12330923
scientific_nameuncultured Methylococcaceae bacterium
sequencing methodIllumina MiSeq,Illumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR5189948,SRR9849951 of study SRP097184.

BioProject
PRJEB82487 Bin Chicken Rare Biosphere Genomes
Retrieve all samples from this project

Submission
EBI; 2024-12-12
Accession:
SAMEA117363826
ID:
45778303

Nucleotide

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