Metagenome-assembled genome: SRP329387_co1_218

Organism: uncultured Methylobacillus sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Methylobacillus; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2018
environmental medium	aquatic
geographic location	China
investigation type	metagenome-assembled genome
isolation source	estuary metagenome
project name	Marine group II euryarchaea (MGII) dominates the planktonic archaeal community in global surface seawater and is associated to particulate organic matters which mainly consist of polysaccharides. However, the polysaccharides metabolism of MGII euryarchaea is unclear. In this study, the distribution and potential for polysaccharides metabolism of MGII euryarchaea in estuarine area were investigated.
sample name	SRP329387_co1_218
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	SRP329387_co1_218
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	SemiBin2;2.0.2;default
completeness score	94.6
completeness software	CheckM2;1.0.2;default
contamination score	1.69
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	estuary biome
metagenomic source	estuary metagenome
sample derived from	SAMN20309213,SAMN20309211
scientific_name	uncultured Methylobacillus sp.
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR15213105,SRR15213107 of study SRP329387.

BioProject: PRJEB82487 Bin Chicken Rare Biosphere Genomes
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BioSample