Metagenome-assembled genome: binchicken_co150_216

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Result Filters

Organism: uncultured Planctomycetota bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Planctomycetota; environmental samples

Attributes

broad-scale environmental context	terrestrial
collection date	2016-06-09
environmental medium	terrestrial
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	salt marsh metagenome
project name	Salt marsh sediment microbial communities from the Plum Island Ecosystem Long term ecological research (LTER), Massachusetts, United States
sample name	binchicken_co150_216
ENA first public	2024-12-11
ENA-CHECKLIST	ERC000047
INSDC center name	CMR
INSDC status	public
Submitter Id	binchicken_co150_216
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.15.4;default
binning parameters	coverage and kmer
binning software	MetaBAT2;2.15;default
completeness score	82.89
completeness software	CheckM2;1.0.2;default
contamination score	0.5
geographic location (latitude)	42.722
geographic location (longitude)	-70.847
local environmental context	salt marsh biome
metagenomic source	salt marsh metagenome
sample derived from	SAMN11530032,SAMN11530061,SAMN11532790
scientific_name	uncultured Planctomycetota bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic runs SRR9700623,SRR9700626,SRR9705675 of study SRP215066.