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Uncultivated Sphaerochaeta sp. UBA5212 genome recovered from SRX559902

Identifiers
BioSample: SAMN06455340; Sample name: Sphaerochaeta sp. UBA5212; SRA: SRS2034259
Organism
Sphaerochaeta sp. UBA5212
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Sphaerochaetaceae; Sphaerochaeta; unclassified Sphaerochaeta
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationCanada: Fort McMurray, Alberta
isolateUBA5212
isolation sourcebiofilm
metagenome sourcehydrocarbon metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX559902 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated96.52%
contamination_estimated4.55%
environmental_sampletrue
genome_coverage10.92
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the hydrocarbon metagenome reads: SRR1313269,SRR1313278,SRR1313272,SRR1313274,SRR1313275,SRR1313277.
Description

Uncultivated genome recovered from an assembly of the SRX559902 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06455340
ID:
6455340

BioProject SRA Nucleotide

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