Metagenome-assembled genome: dXfDHHuY2Z_bin.2.MAG

Organism: uncultured Rothia sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human skin
environmental medium	skin
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human skin
project name	Skin Microbial Genome Catalogue
sample name	dXfDHHuY2Z_bin.2.MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-10
ENA-LAST-UPDATE	2022-08-10
External Id	SAMEA110089013
INSDC center alias	NIH/NHGRI
INSDC center name	NIH/NHGRI
INSDC first public	2022-08-10T16:27:25Z
INSDC last update	2022-08-10T16:27:25Z
INSDC status	public
Submitter Id	dXfDHHuY2Z_bin.2.MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaSPAdes v.3.13.0
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning software	metaWRAP v1.2.1
completeness score	100
completeness software	CheckM v1.1.2
contamination score	100
geographic location (latitude)	38.984653
geographic location (longitude)	-77.09471
metagenomic source	human skin metagenome
sample derived from	SAMN03025556,SAMN04359831,SAMN04359848
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

Description: This sample represents a Pool Time Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1624855,SRR1624856,SRR1624857,SRR1624858,SRR1624859,SRR1624860,SRR1624861,SRR1624862,SRR1624863,SRR3183592,SRR3183593,SRR3183594,SRR3183595,SRR3183596,SRR3183784,SRR3183785,SRR3183786,SRR3183787.

BioProject: PRJEB47281 Skin Microbial Genome Catalogue
Retrieve all samples from this project

BioSample