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Metagenome-assembled genome: kx6uzgKyuj_bin.11.MAG

Identifiers
BioSample: SAMEA110089170; SRA: ERS12187987
Organism
Mycolicibacterium mucogenicum
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium
Attributes
collection date2013-05-22
broad-scale environmental contexthuman-associated habitat
local-scale environmental contexthuman skin
environmental mediumskin
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman skin
project nameSkin Microbial Genome Catalogue
sample namekx6uzgKyuj_bin.11.MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-10
ENA-LAST-UPDATE2022-08-10
External IdSAMEA110089170
INSDC center aliasNIH/NHGRI
INSDC center nameNIH/NHGRI
INSDC first public2022-08-10T16:27:25Z
INSDC last update2022-08-10T16:27:25Z
INSDC statuspublic
Submitter Idkx6uzgKyuj_bin.11.MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaSPAdes v.3.13.0
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning softwaremetaWRAP v1.2.1
completeness score99.41
completeness softwareCheckM v1.1.2
contamination score99.41
geographic location (latitude)38.984653
geographic location (longitude)-77.09471
metagenomic sourcehuman skin metagenome
sample derived fromSAMN03025667,SAMN03025668,SAMN03025669,SAMN03025670,SAMN03025671,SAMN03025672,SAMN03025673,SAMN03025674,SAMN03025675,SAMN03025676,SAMN03025677,SAMN03025678,SAMN03025679,SAMN03025680,SAMN03025681,SAMN03025682,SAMN03025683
sequencing methodIllumina
taxonomic identity markermulti-marker approach
Description

This sample represents a Pool HV Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1632848,SRR1632849,SRR1632850,SRR1632851,SRR1632852,SRR1632853,SRR1632854,SRR1632855,SRR1632856,SRR1632857,SRR1632858,SRR1632859,SRR1632860,SRR1632861,SRR1632977,SRR1632978,SRR1632979,SRR1632980,SRR1632981,SRR1632982,SRR1632983,SRR1632984,SRR1632985,SRR1632986,SRR1632987,SRR1632988,SRR1632989,SRR1632990,SRR1632991,SRR1632992,SRR1632993,SRR1632994,SRR1632995,SRR1632996,SRR1632997,SRR1632998,SRR1632999,SRR1633000,SRR1633001,SRR1633002,SRR1633003,SRR1633004,SRR1633005,SRR1633006,SRR1633007,SRR1633008,SRR1633009,SRR1633010,SRR1633011,SRR1633012,SRR1633013,SRR1633014,SRR1633015,SRR1633016,SRR1633017,SRR1633018,SRR1633019,SRR1633020,SRR1633021,SRR1633022,SRR1633023,SRR1633024,SRR1633025,SRR1633026,SRR1633027,SRR1633028,SRR1633029,SRR1633030,SRR1633031,SRR1633032,SRR1633033,SRR1633133,SRR1633134,SRR1633135,SRR1633136,SRR1633137,SRR1633138,SRR1633139,SRR1633140,SRR1633141,SRR1633142,SRR1633143,SRR1633144,SRR1633145,SRR1633146,SRR1633147,SRR1633148,SRR1633149,SRR1633150,SRR1633151,SRR1633152,SRR1633153,SRR1633154,SRR1633155,SRR1633156,SRR1633157,SRR1633158,SRR1633159,SRR1633160,SRR1633161,SRR1633162,SRR1633163,SRR1633164,SRR1633165,SRR1633166,SRR1633167,SRR1633168,SRR1633169,SRR1633170,SRR1633171,SRR1633172,SRR1633173,SRR1633174,SRR1633175,SRR1633176,SRR1633177.

BioProject
PRJEB47281 Skin Microbial Genome Catalogue
Retrieve all samples from this project

Submission
EBI; 2022-08-11
Accession:
SAMEA110089170
ID:
30255017

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