ERS6344545

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Ferrithrix thermotolerans DSM 19514
cellular organisms; Bacteria; Bacillati; Actinomycetota; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrithrix; Ferrithrix thermotolerans

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-11-05
environmental medium	fresh water
geographic location	Italy
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	LH-05nov19-18
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-22T12:26:13Z
ENA-LAST-UPDATE	2022-07-22T12:26:13Z
External Id	SAMEA110379481
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-22T12:26:13Z
INSDC last update	2022-07-22T12:26:13Z
INSDC status	public
Submitter Id	LH-05nov19-18
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	79.26
completeness software	checkm
contamination score	4.27
geographic location (latitude)	46.009123
geographic location (longitude)	9.021579
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS6344545
scientific_name	Ferrithrix thermotolerans DSM 19514
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach