ERS6344548

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Result Filters

Organism: Opitutus sp. GAS368
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Opitutia; Opitutales; Opitutaceae; Opitutus; unclassified Opitutus

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-10-21
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	ME-21oct19-159
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-21
ENA-LAST-UPDATE	2022-07-21
External Id	SAMEA110379681
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-21T16:25:28Z
INSDC last update	2022-07-21T16:25:28Z
INSDC status	public
Submitter Id	ME-21oct19-159
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	97.17
completeness software	checkm
contamination score	0
geographic location (latitude)	50.179564
geographic location (longitude)	12.584932
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS6344548
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach