ERS4065079

Organism: Candidatus Kuenenia stuttgartiensis
cellular organisms; Bacteria; Pseudomonadati; PVC group; Planctomycetota; Candidatus Brocadiia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-04-08
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	MH-08apr19-51
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-21
ENA-LAST-UPDATE	2022-07-21
External Id	SAMEA110379744
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-21T16:25:29Z
INSDC last update	2022-07-21T16:25:29Z
INSDC status	public
Submitter Id	MH-08apr19-51
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	96.63
completeness software	checkm
contamination score	1.12
geographic location (latitude)	50.179564
geographic location (longitude)	12.584932
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS4065079
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35640 Freshwater metagenomes from different European and Asian lakes
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