ERS4065073

Organism: Chryseobacterium gleum
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-05-02
environmental medium	fresh water
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	MoH-02may19-300
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-21T20:27:47Z
ENA-LAST-UPDATE	2022-07-21T20:27:47Z
External Id	SAMEA110380103
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-21T20:27:47Z
INSDC last update	2022-07-21T20:27:47Z
INSDC status	public
Submitter Id	MoH-02may19-300
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	91.67
completeness software	checkm
contamination score	0.81
geographic location (latitude)	47.806248
geographic location (longitude)	13.398749
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS4065073
scientific_name	Chryseobacterium gleum
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

BioSample