ERS4065083

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Result Filters

Organism: Leptospira interrogans serovar Manilae
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Leptospirales; Leptospiraceae; Leptospira; Leptospira interrogans

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-04-30
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	MsH-30apr19-140
serovar	Manilae
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-22
ENA-LAST-UPDATE	2022-07-22
External Id	SAMEA110380255
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-22T16:26:49Z
INSDC last update	2022-07-22T16:26:49Z
INSDC status	public
Submitter Id	MsH-30apr19-140
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	98.82
completeness software	checkm
contamination score	0
geographic location (latitude)	50.539746
geographic location (longitude)	13.645342
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS4065083
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach