ERS4065065

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Result Filters

Organism: Singulisphaera sp. GP187
cellular organisms; Bacteria; Pseudomonadati; PVC group; Planctomycetota; Planctomycetia; Isosphaerales; Isosphaeraceae; Singulisphaera; unclassified Singulisphaera

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-04-08
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	TH-08apr19-10
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-22T00:26:11Z
ENA-LAST-UPDATE	2022-07-22T00:26:11Z
External Id	SAMEA110380364
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-22T00:26:11Z
INSDC last update	2022-07-22T00:26:11Z
INSDC status	public
Submitter Id	TH-08apr19-10
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	96.21
completeness software	checkm
contamination score	0
geographic location (latitude)	46.683333
geographic location (longitude)	7.716667
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS4065065
scientific_name	Singulisphaera sp. GP187
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach