ERS4065077

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Result Filters

Organism: Bordetella parapertussis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella

Attributes

broad-scale environmental context	freshwater lake
collection date	2019-05-03
environmental medium	fresh water
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	TrH-03may19-76
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-22T16:26:49Z
ENA-LAST-UPDATE	2022-07-22T16:26:49Z
External Id	SAMEA110380508
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-07-22T16:26:49Z
INSDC last update	2022-07-22T16:26:49Z
INSDC status	public
Submitter Id	TrH-03may19-76
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	97.04
completeness software	checkm
contamination score	2.06
geographic location (latitude)	47.851155
geographic location (longitude)	13.805195
local environmental context	lake
metagenomic source	freshwater metagenome
sample derived from	ERS4065077
scientific_name	Bordetella parapertussis
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach