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Metagenome-assembled genome: SRR15732366_bin.6_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110402609; SRA: ERS12500801
Organism
Lactobacillus johnsonii
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Attributes
broad-scale environmental contextPig digestive system
collection date2020-10-12
environmental mediumDigesta
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameThe differences of jejunal microorganisms among four pig species were studied by metagenomic sequencing
sample nameSRR15732366_bin.6_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21
ENA-LAST-UPDATE2022-07-21
External IdSAMEA110402609
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-21T20:27:48Z
INSDC last update2022-07-21T20:27:48Z
INSDC statuspublic
Submitter IdSRR15732366_bin.6_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score92.25
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextIntestine
metagenomic sourcepig gut metagenome
sample derived fromSAMN20953131
sequencing methodIllumina MiSeq
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15732366 of study SRP335897.

BioProject
PRJEB52638
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110402609
ID:
29899882

BioProject Nucleotide

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