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Metagenome-assembled genome: SRR15732367_bin.29_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110402622; SRA: ERS12500814
Organism
uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples
Attributes
broad-scale environmental contextPig digestive system
collection date2020-10-04
environmental mediumDigesta
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameThe differences of jejunal microorganisms among four pig species were studied by metagenomic sequencing
sample nameSRR15732367_bin.29_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-21T20:27:49Z
ENA-LAST-UPDATE2022-07-21T20:27:49Z
External IdSAMEA110402622
INSDC center nameEMG
INSDC first public2022-07-21T20:27:49Z
INSDC last update2022-07-21T20:27:49Z
INSDC statuspublic
Submitter IdSRR15732367_bin.29_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEBI-EMG
completeness score81.82
completeness softwareCheckM
contamination score1.48
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextIntestine
metagenomic sourcepig gut metagenome
sample derived fromSAMN20953122
scientific_nameuncultured Lachnospiraceae bacterium
sequencing methodIllumina MiSeq
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15732367 of study SRP335897.

BioProject
PRJEB52638
Retrieve all samples from this project

Submission
EBI; 2022-07-22
Accession:
SAMEA110402622
ID:
29899895

BioProject Nucleotide

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