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Metagenome-assembled genome: SRR11784280_bin.31_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110586353; SRA: ERS12684135
Organism
uncultured Fibrobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Fibrobacterota; Fibrobacteria; environmental samples
Attributes
broad-scale environmental contextSheep digestive system
collection datenot provided
environmental mediumRumen content
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcesheep gut metagenome
project nameRumen metagenome based on Illumina Hiseq
sample nameSRR11784280_bin.31_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-09
ENA-LAST-UPDATE2022-08-09
External IdSAMEA110586353
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-09T16:29:49Z
INSDC last update2022-08-09T16:29:49Z
INSDC statuspublic
Submitter IdSRR11784280_bin.31_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score54.31
completeness softwareCheckM
contamination score4.31
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextRumen
metagenomic sourcesheep gut metagenome
sample derived fromSAMN14884647
sequencing methodHiSeq X Ten
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Fibrobacteres;c__Fibrobacteria;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11784280 of study SRP261434.

BioProject
PRJEB54624
Retrieve all samples from this project

Submission
EBI; 2022-08-10
Accession:
SAMEA110586353
ID:
30233379

BioProject Nucleotide

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