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Metagenome-assembled genome: SRR11784282_bin.67_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110586448; SRA: ERS12684230
Organism
uncultured Azospirillum sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum; environmental samples
Attributes
broad-scale environmental contextSheep digestive system
collection datenot provided
environmental mediumRumen content
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcesheep gut metagenome
project nameRumen metagenome based on Illumina Hiseq
sample nameSRR11784282_bin.67_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-09
ENA-LAST-UPDATE2022-08-09
External IdSAMEA110586448
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-09T16:29:49Z
INSDC last update2022-08-09T16:29:49Z
INSDC statuspublic
Submitter IdSRR11784282_bin.67_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score75.28
completeness softwareCheckM
contamination score0.06
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextRumen
metagenomic sourcesheep gut metagenome
sample derived fromSAMN14884645
sequencing methodHiSeq X Ten
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Azospirillum;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11784282 of study SRP261434.

BioProject
PRJEB54624
Retrieve all samples from this project

Submission
EBI; 2022-08-10
Accession:
SAMEA110586448
ID:
30233474

BioProject Nucleotide

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