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Metagenome-assembled genome: SRR14411243_bin.14_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA111500450; SRA: ERS13594210
Organism
uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2014-01-01
environmental mediumfeces
geographic locationLithuania
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameThe project provides metagenomic sequencing of wild rodent species previously sequenced using 16S rRNA sequencing (doi: 10.1111/ele.13240 & doi: 10.1371/journal.pone.0222501) as part of an exploration of the rodent gut microbiome.
sample nameSRR14411243_bin.14_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-22
ENA-LAST-UPDATE2022-10-22
External IdSAMEA111500450
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-22T16:38:22Z
INSDC last update2022-10-22T16:38:22Z
INSDC statuspublic
Submitter IdSRR14411243_bin.14_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score83.26
completeness softwareCheckM
contamination score0.88
geographic location (latitude)54.69
geographic location (longitude)25.23
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN18914688
sequencing methodNextSeq 500
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14411243 of study SRP318299.

BioProject
PRJEB56464
Retrieve all samples from this project

Submission
EBI; 2022-10-23
Accession:
SAMEA111500450
ID:
31419460

BioProject Nucleotide

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