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Metagenome-assembled genome: SRR14411325_bin.9_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA111500763; SRA: ERS13594523
Organism
uncultured Treponema sp.
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2014-01-01
environmental mediumfeces
geographic locationLithuania
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameThe project provides metagenomic sequencing of wild rodent species previously sequenced using 16S rRNA sequencing (doi: 10.1111/ele.13240 & doi: 10.1371/journal.pone.0222501) as part of an exploration of the rodent gut microbiome.
sample nameSRR14411325_bin.9_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-22
ENA-LAST-UPDATE2022-10-22
External IdSAMEA111500763
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-22T16:38:21Z
INSDC last update2022-10-22T16:38:21Z
INSDC statuspublic
Submitter IdSRR14411325_bin.9_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score97.82
completeness softwareCheckM
contamination score0.84
geographic location (latitude)54.69
geographic location (longitude)25.23
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN18914701
sequencing methodNextSeq 500
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae;g__Treponema;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14411325 of study SRP318299.

BioProject
PRJEB56464
Retrieve all samples from this project

Submission
EBI; 2022-10-23
Accession:
SAMEA111500763
ID:
31419773

BioProject Nucleotide

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