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Metagenome-assembled genome: SRR15431173_bin.17_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA112147219; SRA: ERS14257127
Organism
uncultured Candidatus Saccharibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2021-02-01
environmental mediumfeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameDiet can usually cause changes in the intestinal microbiota, many of which contain one or more antibiotic resistance genes. Therefore, different diets will also have an impact on the intestinal antibiotic resistance genome. Here we share the changes of intestinal antibiotic resistant genome and bacterial microbiota under the effects of high-sugar, high-fat, high-protein diet and normal diet.
sample nameSRR15431173_bin.17_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-18
ENA-LAST-UPDATE2022-11-18
External IdSAMEA112147219
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-11-18T20:20:09Z
INSDC last update2022-11-18T20:20:09Z
INSDC statuspublic
Submitter IdSRR15431173_bin.17_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarenot provided
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score61.18
completeness softwareCheckM
contamination score0.0
geographic location (latitude)39.6
geographic location (longitude)117.15
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN20708330
sequencing methodIllumina HiSeq 4000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15431173 of study SRP332348.

BioProject
PRJEB57440
Retrieve all samples from this project

Submission
EBI; 2022-11-20
Accession:
SAMEA112147219
ID:
31806021

BioProject Nucleotide

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