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CE-Jul18-102

Identifiers
BioSample: SAMEA112172041; SRA: ERS14281882
Organism
Actinomycetota bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; unclassified Actinomycetota
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2018-07-03
environmental mediumfreshwater lake biome
geographic locationSwitzerland
isolation sourcelake water
project namePRJEB35770
sample nameCE-Jul18-102
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-29
ENA-LAST-UPDATE2022-11-29
External IdSAMEA112172041
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-11-29T20:21:11Z
INSDC last update2022-11-29T20:21:11Z
INSDC statuspublic
Submitter IdCE-Jul18-102
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score44.83
completeness softwarecheckm
contamination score0.86
geographic location (latitude)47.533333
geographic location (longitude)9.516667
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS4409418
taxonomic identity markermulti-marker approach
Description

CE-Jul18-102

BioProject
PRJEB35770 Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Retrieve all samples from this project

Submission
EBI; 2022-11-30
Accession:
SAMEA112172041
ID:
31940585

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