Jr-28aug17-134

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; unclassified Pseudomonadota

Attributes

broad-scale environmental context	freshwater ecosystem
collection date	2017-08-28
environmental medium	freshwater lake biome
geographic location	Czech Republic
isolation source	lake water
project name	PRJEB35770
sample name	Jr-28aug17-134
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-30
ENA-LAST-UPDATE	2022-11-30
External Id	SAMEA112173058
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-11-30T00:19:07Z
INSDC last update	2022-11-30T00:19:07Z
INSDC status	public
Submitter Id	Jr-28aug17-134
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	92.17
completeness software	checkm
contamination score	3.02
geographic location (latitude)	48.6189
geographic location (longitude)	14.6731
local environmental context	freshwater lake biome
metagenomic source	lake water metagenome
sample derived from	ERS4146260
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35770 Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Retrieve all samples from this project