RE-18aug17-343

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Result Filters

Organism: Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; unclassified Pseudomonadota

Attributes

broad-scale environmental context	freshwater ecosystem
collection date	2017-08-18
environmental medium	freshwater lake biome
geographic location	Czech Republic
isolation source	lake water
project name	PRJEB35770
sample name	RE-18aug17-343
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-30
ENA-LAST-UPDATE	2022-11-30
External Id	SAMEA112173722
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-11-30T04:31:44Z
INSDC last update	2022-11-30T04:31:44Z
INSDC status	public
Submitter Id	RE-18aug17-343
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	76.62
completeness software	checkm
contamination score	2.68
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
local environmental context	freshwater lake biome
metagenomic source	lake water metagenome
sample derived from	ERS4146248
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35770 Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Retrieve all samples from this project