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RE-26jul17-116

Identifiers
BioSample: SAMEA112174033; SRA: ERS14283874
Organism
Verrucomicrobiota bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; unclassified Verrucomicrobiota
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2017-07-26
environmental mediumfreshwater lake biome
geographic locationCzech Republic
isolation sourcelake water
project namePRJEB35770
sample nameRE-26jul17-116
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112174033
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-11-30T04:31:45Z
INSDC last update2022-11-30T04:31:45Z
INSDC statuspublic
Submitter IdRE-26jul17-116
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score80.26
completeness softwarecheckm
contamination score3.21
geographic location (latitude)48.846361
geographic location (longitude)14.487639
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS4146244
taxonomic identity markermulti-marker approach
Description

RE-26jul17-116

BioProject
PRJEB35770 Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes)
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112174033
ID:
31961639

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