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TE-Jun18-232

Identifiers
BioSample: SAMEA112176078; SRA: ERS14285919
Organism
Actinomycetota bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; unclassified Actinomycetota
Attributes
broad-scale environmental contextfreshwater ecosystem
collection date2018-06-11
environmental mediumfreshwater lake biome
geographic locationSwitzerland
isolation sourcelake water
project namePRJEB35640
sample nameTE-Jun18-232
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-11-30
ENA-LAST-UPDATE2022-11-30
External IdSAMEA112176078
INSDC center aliasBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2022-11-30T12:18:08Z
INSDC last update2022-11-30T12:18:08Z
INSDC statuspublic
Submitter IdTE-Jun18-232
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score55.17
completeness softwarecheckm
contamination score3.45
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS11684480
taxonomic identity markermulti-marker approach
Description

TE-Jun18-232

BioProject
PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Submission
EBI; 2022-12-01
Accession:
SAMEA112176078
ID:
31963684

BioProject Nucleotide

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