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Metagenome-assembled genome: SRR15510218_bin.53_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA112246823; SRA: ERS14357693
Organism
uncultured Desulfovibrio sp.
cellular organisms; Bacteria; Pseudomonadati; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2020-05-21
environmental mediumfeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameIntestinal Virome Diversity Correlates with Intestinal Microbiome Diversity in Ob/Ob and Apoe-/- Mice
sample nameSRR15510218_bin.53_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-12-15
ENA-LAST-UPDATE2022-12-15
External IdSAMEA112246823
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-12-15T16:21:29Z
INSDC last update2022-12-15T16:21:29Z
INSDC statuspublic
Submitter IdSRR15510218_bin.53_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score98.22
completeness softwareCheckM
contamination score0.0
geographic location (latitude)23.6
geographic location (longitude)113.15
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN20821317
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15510218 of study SRP333077.

BioProject
PRJEB57738
Retrieve all samples from this project

Submission
EBI; 2022-12-16
Accession:
SAMEA112246823
ID:
32272401

BioProject Nucleotide

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