U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: chick21__bin2

Identifiers
BioSample: SAMEA112285491; SRA: ERS14396337
Organism
Butyricimonas faecihominis
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Odoribacteraceae; Butyricimonas
Attributes
broad-scale environmental contexthost-associated habitat
collection date2016
environmental mediumcaecal content
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameDSM US
sample namechick21__bin2
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA112285491
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2023-01-03T16:28:37Z
INSDC last update2023-01-03T16:28:37Z
INSDC statuspublic
Submitter Idchick21__bin2
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.4
binning parametersdefault parameters
binning softwareSemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3
completeness score84.13
completeness softwarecheckm2 v0.1.3
contamination score2.43
geographic location (latitude)39.768403
geographic location (longitude)-86.158068
geographic location (region and locality)Middle West
local environmental contexthost-associated habitat
metagenomic sourcechicken gut metagenome
sample derived fromERS13620144
scientific_nameButyricimonas faecihominis
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620144

BioProject
PRJEB53667
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA112285491
ID:
32570512

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center