Metagenome-assembled genome: chick28__bin17

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Result Filters

Organism: Akkermansia muciniphila
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia

Attributes

broad-scale environmental context	host-associated habitat
collection date	2016
environmental medium	caecal content
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	chicken caecal content
project name	DSM US
sample name	chick28__bin17
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA112285525
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2023-01-03T16:28:37Z
INSDC last update	2023-01-03T16:28:37Z
INSDC status	public
Submitter Id	chick28__bin17
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.4
binning parameters	default parameters
binning software	SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3
completeness score	100
completeness software	checkm2 v0.1.3
contamination score	0.27
geographic location (latitude)	39.768403
geographic location (longitude)	-86.158068
geographic location (region and locality)	Middle West
local environmental context	host-associated habitat
metagenomic source	chicken gut metagenome
sample derived from	ERS13620151
scientific_name	Akkermansia muciniphila
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach