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Metagenome-assembled genome: dsm_us_coassembly__bin150

Identifiers
BioSample: SAMEA112285594; SRA: ERS14396440
Organism
Candidatus Gastranaerophilales bacterium
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Candidatus Melainabacteria; Candidatus Gastranaerophilales; unclassified Candidatus Gastranaerophilales
Attributes
broad-scale environmental contexthost-associated habitat
collection date2016
environmental mediumcaecal content
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameDSM US
sample namedsm_us_coassembly__bin150
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA112285594
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2023-01-03T16:28:38Z
INSDC last update2023-01-03T16:28:38Z
INSDC statuspublic
Submitter Iddsm_us_coassembly__bin150
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.4
binning parametersdefault parameters
binning softwareSemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3
completeness score86.38
completeness softwarecheckm2 v0.1.3
contamination score3.62
geographic location (latitude)39.768403
geographic location (longitude)-86.158068
geographic location (region and locality)Middle West
local environmental contexthost-associated habitat
metagenomic sourcechicken gut metagenome
sample derived fromERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171
scientific_nameCandidatus Gastranaerophilales bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

BioProject
PRJEB53667
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA112285594
ID:
32570615

BioProject Nucleotide

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