U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome: ERR9607186_bin.5_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114061653; SRA: ERS16045517
Organism
Akkermansia muciniphila
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia
Attributes
broad-scale environmental contextHuman digestive system
collection date2015
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameHuman gut microbiota is believed to be directly or indirectly involved in cardiovascular diseases and hypertension. However, the identification and functional status of the hypertension-related gut microbe(s) have not yet been surveyed in a comprehensive manner. Here we characterized the gut microbiome in hypertension status by comparing fecal samples of 60 patients with primary hypertension and 60 gender-, age-, and body weight-matched healthy controls based on whole-metagenome shotgun sequencing.
sample nameERR9607186_bin.5_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:57Z
ENA-LAST-UPDATE2023-07-13T16:22:57Z
External IdSAMEA114061653
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:57Z
INSDC last update2023-07-13T16:22:57Z
INSDC statuspublic
Submitter IdERR9607186_bin.5_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score93.47
completeness softwareCheckM
contamination score0.0
geographic location (latitude)39.0
geographic location (longitude)122.0
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA14093519
scientific_nameAkkermansia muciniphila
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9607186 of study ERP023883.

BioProject
PRJEB62825
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114061653
ID:
36477744

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center