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Metagenome-Assembled Genome: ERR10149223_bin.5_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114096071; SRA: ERS16079912
Organism
uncultured Bifidobacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples
Attributes
broad-scale environmental contextHuman digestive system
collection date2020-10-21
environmental mediumfaeces
geographic locationSouth Korea
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project namewhole metagenomic sequencing for child gut microbiome
sample nameERR10149223_bin.5_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-18T12:24:29Z
ENA-LAST-UPDATE2023-07-18T12:24:29Z
External IdSAMEA114096071
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-18T12:24:29Z
INSDC last update2023-07-18T12:24:29Z
INSDC statuspublic
Submitter IdERR10149223_bin.5_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score90.4
completeness softwareCheckM
contamination score4.11
geographic location (latitude)0.0
geographic location (longitude)0.0
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA111279298
scientific_nameuncultured Bifidobacterium sp.
sequencing methodIllumina HiSeq 4000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10149223 of study ERP140641.

BioProject
PRJEB63310
Retrieve all samples from this project

Submission
EBI; 2023-07-20
Accession:
SAMEA114096071
ID:
36651212

BioProject Nucleotide

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