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Metagenome-Assembled Genome: SRR16280049_bin.4_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114122479; SRA: ERS16103199
Organism
Leclercia adecarboxylata
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Leclercia
Attributes
broad-scale environmental contextHuman digestive system
collection date2019-05-01/2020-10-30
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameParkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.
sample nameSRR16280049_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-20T12:20:52Z
ENA-LAST-UPDATE2023-07-20T12:20:52Z
External IdSAMEA114122479
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-20T12:20:52Z
INSDC last update2023-07-20T12:20:52Z
INSDC statuspublic
Submitter IdSRR16280049_bin.4_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score51.88
completeness softwareCheckM
contamination score0.86
geographic location (latitude)37.51
geographic location (longitude)122.12
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMN22185210
scientific_nameLeclercia adecarboxylata
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia;s__Leclercia adecarboxylata
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16280049 of study SRP340671.

BioProject
PRJEB63522
Retrieve all samples from this project

Submission
EBI; 2023-07-22
Accession:
SAMEA114122479
ID:
36681889

BioProject Nucleotide

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