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Metagenome-Assembled Genome: SRR16280108_bin.4_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114122790; SRA: ERS16103507
Organism
Clostridium perfringens
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Attributes
broad-scale environmental contextHuman digestive system
collection date2019-05-01/2020-10-30
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameParkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation.
sample nameSRR16280108_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-20T12:20:53Z
ENA-LAST-UPDATE2023-07-20T12:20:53Z
External IdSAMEA114122790
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-20T12:20:53Z
INSDC last update2023-07-20T12:20:53Z
INSDC statuspublic
Submitter IdSRR16280108_bin.4_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score100
completeness softwareCheckM
contamination score0.0
geographic location (latitude)37.51
geographic location (longitude)122.12
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMN22185157
scientific_nameClostridium perfringens
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium perfringens
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR16280108 of study SRP340671.

BioProject
PRJEB63522
Retrieve all samples from this project

Submission
EBI; 2023-07-22
Accession:
SAMEA114122790
ID:
36682197

BioProject Nucleotide

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