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Canada Basin MAG CB9_331.34

Identifiers
BioSample: SAMEA114238403; SRA: ERS16223854
Organism
Acidimicrobiia bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; Acidimicrobiia; unclassified Acidimicrobiia
Attributes
broad-scale environmental contextmarine biome (ENVO:00000447)
collection date2017-09-19
environmental mediumsea water (ENVO:00002149 )
geographic locationArctic Ocean
isolation sourceMAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at salinity of 33.1 PSU
project nameBeaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample nameCB9_331.34
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-10-28T00:34:18Z
ENA-LAST-UPDATE2023-10-28T00:34:18Z
External IdSAMEA114238403
INSDC center nameConcordia University
INSDC first public2023-10-28T00:34:18Z
INSDC last update2023-10-28T00:34:18Z
INSDC statuspublic
Submitter IdCB9_331.34
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSpades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parametersDefault parameters; minimum scaffold length 2500 bp
binning softwareMetabat2 v.2.12.1
completeness score82.79
completeness softwareCheckM v.1.0.7
contamination score4.27
geographic location (latitude)77.9972
geographic location (longitude)149.9302
local environmental context1000m depth (ENVO:XXXXXXXX)
metagenomic sourceaquatic metagenome
sample derived fromERS15586169
scientific_nameAcidimicrobiia bacterium
taxonomic identity markerMulti-marker approach
Description

Uncultivated Acidimicrobiia bacterium UBA2110 recovered from ERS15586169

BioProject
PRJEB57575 Microbiomes of the Canada Basin, Arctic Ocean
Retrieve all samples from this project

Submission
EBI; 2023-10-29
Accession:
SAMEA114238403
ID:
38029407

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