Pseudomonadota bacterium KLAP178

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Result Filters

Organism: Pseudomonadota bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; unclassified Pseudomonadota

Attributes

broad-scale environmental context	wastewater treatment plant (ENVO:00002043)
collection date	2019-04-30
environmental medium	waste water (ENVO:00002001)
geographic location	Sweden
isolation source	Biofilm from a full-scale sidestream partial nitritation anammox MBBR
project name	Partial nitritation anammox biofilm colonization
sample name	KLAP178
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-08-10T16:20:53Z
ENA-LAST-UPDATE	2023-08-10T16:20:53Z
External Id	SAMEA114249007
INSDC center name	Lund University
INSDC first public	2023-08-10T16:20:53Z
INSDC last update	2023-08-10T16:20:53Z
INSDC status	public
Submitter Id	KLAP178
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	89.17
completeness software	CheckM
contamination score	2.51
geographic location (latitude)	55.5242
geographic location (longitude)	12.9035
geographic location (region and locality)	Klagshman WWTP
local environmental context	biofilm (ENVO_00002034)
metagenomic source	biofilm metagenome
sample derived from	ERS14314767
scientific_name	Pseudomonadota bacterium
taxonomic identity marker	multi-marker approach

BioProject: PRJEB58181 Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm bioreactor
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