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651961eb-ab73-42ae-b734-39a1bf63a7e4-asg-MAGScoT_cleanbin_000009

Identifiers
BioSample: SAMEA114406227; SRA: ERS16394901
Organism
Arenicellales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Arenicellales; unclassified Arenicellales
Attributes
broad-scale environmental contextaquatic biome
collected byKATHRIN BUSCH
collection date2018-08-05
depth1767
environmental mediumadult sponge tissue
geographic locationNorway
host life stageadult
hostGeodia parva
host taxonomy ID1390724 (1390724)
identified byHANS TORE RAPP
investigation typemetagenome-assembled genome
isolation sourceSponge: Geodia parva
tissueWHOLE ORGANISM
project nameASG
family rolebeneficial
sample name651961eb-ab73-42ae-b734-39a1bf63a7e4
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id651961eb-ab73-42ae-b734-39a1bf63a7e4
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionGEOMAR
completeness score95.43
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score0.61
geographic location (latitude)73.77
geographic location (longitude)7.00
geographic location (region and locality)Schulz_Bank
habitatseamount
identifier_affiliationUiB, Norway
local environmental contextmarine benthic biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted36
sample derived fromSAMEA114405996
scientific_nameArenicellales bacterium
sequencing methodPacbio Sequel II
specimen idGHC0000030
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification fully defined by topology
tolidodGeoParv2.Arenicellales_1
BioProject
PRJEB66616 odGeoParv2.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114406227
ID:
37509778

BioProject Nucleotide

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