broad-scale environmental context | aquatic biome |
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collected by | JOHANA ROTTEROVA |
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collection date | 2021-10-07 |
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depth | 1899-12-30 |
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environmental medium | ciliate culture |
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geographic location | USA |
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host life stage | vegetative cell |
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host | Metopus strain FRESH26 |
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host taxonomy ID | 2980496 (2980496) |
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identified by | JOHANA ROTTEROVA |
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investigation type | metagenome-assembled genome |
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isolation source | Ciliate: Metopus strain FRESH26 |
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tissue | WHOLE ORGANISM |
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project name | ASG |
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sample collection device or method | hand collected into a 50 ml tube |
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sample name | 414527d9-51fc-44d8-9f9c-d43466d59f4e |
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specimen voucher | NOT PROVIDED |
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16S recovered | Yes |
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16S recovery software | PROKKA (version 1.14.5) |
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ENA-CHECKLIST | ERC000047 |
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GAL | University of British Columbia |
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GAL_sample_id | NOT PROVIDED |
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INSDC center name | Tree of Life Programme |
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MAG coverage software | Minimap2 (version 2.24-r1122) |
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Submitter Id | 414527d9-51fc-44d8-9f9c-d43466d59f4e |
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assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
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assembly software | metaMDBG |
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barcoding center | UNIVERSITY OF RHODE ISLAND |
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binning parameters | coverage; graph; hic-mapping |
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binning software | MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR |
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collecting institution | UNIVERSITY OF RHODE ISLAND |
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completeness score | 99.93 |
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completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
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contamination score | 0.62 |
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culture_or_strain_id | FRESH26 strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA |
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geographic location (latitude) | 41.49 |
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geographic location (longitude) | -71.42 |
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geographic location (region and locality) | RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND |
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habitat | salt marsh sediment |
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identifier_affiliation | UNIVERSITY OF RHODE ISLAND |
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local environmental context | marine salt marsh biome |
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metagenomic source | ciliate metagenome |
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number of standard tRNAs extracted | 108 |
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original collection date | 2019-08-22 |
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original collection location | USA | MASSACHUSETTS | FALMOUTH | FRESH RIVER |
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original geographic location (latitude) | 41.541917 |
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original geographic location (longitude) | -70.622194 |
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sample derived from | SAMEA114406700 |
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scientific_name | Vibrio fluvialis |
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sequencing method | Pacbio Sequel II |
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specimen_id | UOBC0000027 |
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tRNA extraction software | PROKKA (version 1.14.5) |
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taxonomic classification | GTDB-TK (version 2.1.1); GTDB (release 207_v2) |
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taxonomic identity marker | ani_screen |
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tolid | piMetSpea1.Vibrio_fluvialis_1 |
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