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Metagenome-Assembled Genome: SRR5395374_bin.9_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114446912; SRA: ERS16433556
Organism
Capnocytophaga leadbetteri
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga
Attributes
broad-scale environmental contexthuman digestive system
collection datenot provided
environmental mediumsaliva
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project namesalivary metagenomic in Chinese Children
sample nameSRR5395374_bin.9_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR5395374_bin.9_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score72.87
completeness softwareCheckM
contamination score0.95
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN06646522
scientific_nameCapnocytophaga leadbetteri
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga leadbetteri
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR5395374 of study SRP102724.

BioProject
PRJEB56889
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114446912
ID:
37604373

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