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Metagenome-Assembled Genome: SRR5395404_bin.5_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114447063; SRA: ERS16433707
Organism
uncultured Candidatus Saccharimonas sp.
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; Candidatus Saccharimonadia; Candidatus Saccharimonadales; Candidatus Saccharimonadaceae; Candidatus Saccharimonas; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection datenot provided
environmental mediumsaliva
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project namesalivary metagenomic in Chinese Children
sample nameSRR5395404_bin.5_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR5395404_bin.5_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score61.18
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN06646492
scientific_nameuncultured Candidatus Saccharimonas sp.
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__Candidatus Saccharimonas;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR5395404 of study SRP102724.

BioProject
PRJEB56889
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114447063
ID:
37599996

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