Format

Send to:

Choose Destination

Metagenome-Assembled Genome: SRR15839766_bin.1_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114447250; SRA: ERS16433894
Organism
uncultured Porphyromonas sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection date2018-08-30
environmental mediumsaliva
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameThe salivary microbiome of SACC patients and healthy controls was profiled to investigate the microbial diversity, composition and function
sample nameSRR15839766_bin.1_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR15839766_bin.1_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score60.34
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN21380445
scientific_nameuncultured Porphyromonas sp.
sequencing methodIllumina MiSeq
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15839766 of study SRP336507.

BioProject
PRJEB57339
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114447250
ID:
37603672

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center