U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

This sample represents a MAG derived from the metagenomic sample SAMN10093217

Identifiers
BioSample: SAMEA114581330; SRA: ERS16680460
Organism
Gemmiger formicilis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriales incertae sedis; Gemmiger
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07139-L1_cleanbin_000006
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:20Z
ENA-LAST-UPDATE2023-11-07T00:47:20Z
External IdSAMEA114581330
INSDC center nameICMB
INSDC first public2023-11-07T00:47:20Z
INSDC last update2023-11-07T00:47:20Z
INSDC statuspublic
Submitter IdE07139-L1_cleanbin_000006
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score82.5
completeness softwareMAGSCoT
contamination score1.666666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093217
scientific_nameGemmiger formicilis
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581330
ID:
38172970

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center