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This sample represents a MAG derived from the metagenomic sample SAMN10093229

Identifiers
BioSample: SAMEA114581496; SRA: ERS16680626
Organism
Clostridium sp. AT4
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; unclassified Clostridium
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07148-L1_cleanbin_000029
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:13Z
ENA-LAST-UPDATE2023-11-07T00:47:13Z
External IdSAMEA114581496
INSDC center nameICMB
INSDC first public2023-11-07T00:47:13Z
INSDC last update2023-11-07T00:47:13Z
INSDC statuspublic
Submitter IdE07148-L1_cleanbin_000029
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score58.33333333
completeness softwareMAGSCoT
contamination score5
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093229
scientific_nameClostridium sp. AT4
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581496
ID:
38173136

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