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This sample represents a MAG derived from the metagenomic sample SAMN10093261

Identifiers
BioSample: SAMEA114581571; SRA: ERS16680701
Organism
Phocaeicola plebeius
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
Attributes
broad-scale environmental contexthominid body
collection date2012/2013
environmental mediumfeces
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DK)
sample nameE07150-L1_cleanbin_000066
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:26Z
ENA-LAST-UPDATE2023-11-07T00:47:26Z
External IdSAMEA114581571
INSDC center nameICMB
INSDC first public2023-11-07T00:47:26Z
INSDC last update2023-11-07T00:47:26Z
INSDC statuspublic
Submitter IdE07150-L1_cleanbin_000066
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score99.16666667
completeness softwareMAGSCoT
contamination score1.666666667
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN10093261
scientific_namePhocaeicola plebeius
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114581571
ID:
38173211

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